Cyanorak | JBrowse Organism Table

JBrowse Name Species SubCluster Clade SubClade Pigment type Ref. genomes
Pro_AS9601 Prochlorococcus marinus HL HLII HLII Lba Kettler et al. (2007)
Pro_EQPAC1 Prochlorococcus marinus HL HLI HLI Lba Biller et al. (2014)
Pro_GP2 Prochlorococcus marinus HL HLII HLII Lba Biller et al. (2014)
Pro_HNLC1 Prochlorococcus marinus HL HLIV HLIV Lba Rusch et al. (2010)
Pro_HNLC2 Prochlorococcus marinus HL HLIII HLIII Lba Rusch et al. (2010)
Pro_LG Prochlorococcus marinus LL LLII LLII Hba Biller et al. (2014)
Pro_MED4 Prochlorococcus marinus HL HLI HLI Lba Rocap et al. (2003)
Pro_MIT0601 Prochlorococcus marinus LL LLIII LLIII Hba Biller et al. (2014)
Pro_MIT0602 Prochlorococcus marinus LL LLII LLII Hba Biller et al. (2014)
Pro_MIT0603 Prochlorococcus marinus LL LLII LLII Hba Biller et al. (2014)
Pro_MIT0604 Prochlorococcus marinus HL HLII HLII Lba Biller et al. (2014)
Pro_MIT0701 Prochlorococcus marinus LL LLIV LLIV Hba Biller et al. (2014)
Pro_MIT0702 Prochlorococcus marinus LL LLIV LLIV Hba Biller et al. (2014)
Pro_MIT0703 Prochlorococcus marinus LL LLIV LLIV Hba Biller et al. (2014)
Pro_MIT0801 Prochlorococcus marinus LL LLI LLI Hba Biller et al. (2014)
Pro_MIT9107 Prochlorococcus marinus HL HLII HLII Lba Biller et al. (2014)
Pro_MIT9116 Prochlorococcus marinus HL HLII HLII Lba Biller et al. (2014)
Pro_MIT9123 Prochlorococcus marinus HL HLII HLII Lba Biller et al. (2014)
Pro_MIT9201 Prochlorococcus marinus HL HLII HLII Lba Biller et al. (2014)
Pro_MIT9202 Prochlorococcus marinus HL HLII HLII Lba Biller et al. (2014)
Pro_MIT9211 Prochlorococcus marinus LL LLIII LLIII Hba Kettler et al. (2007)
Pro_MIT9215 Prochlorococcus marinus HL HLII HLII Lba Kettler et al. (2007)
Pro_MIT9301 Prochlorococcus marinus HL HLII HLII Lba Kettler et al. (2007)
Pro_MIT9302 Prochlorococcus marinus HL HLII HLII Lba Biller et al. (2014)
Pro_MIT9303 Prochlorococcus sp. LL LLIV LLIV Hba Kettler et al. (2007)
Pro_MIT9311 Prochlorococcus marinus HL HLII HLII Lba Biller et al. (2014)
Pro_MIT9312 Prochlorococcus marinus HL HLII HLII Lba Coleman et al. (2006)
Pro_MIT9313 Prochlorococcus sp. LL LLIV LLIV Hba Rocap et al. (2003)
Pro_MIT9314 Prochlorococcus marinus HL HLII HLII Lba Biller et al. (2014)
Pro_MIT9321 Prochlorococcus marinus HL HLII HLII Lba Biller et al. (2014)
Pro_MIT9322 Prochlorococcus marinus HL HLII HLII Lba Biller et al. (2014)
Pro_MIT9401 Prochlorococcus marinus HL HLII HLII Lba Biller et al. (2014)
Pro_MIT9515 Prochlorococcus marinus HL HLI HLI Lba Kettler et al. (2007)
Pro_NATL1A Prochlorococcus marinus LL LLI LLI Hba Kettler et al. (2007)
Pro_NATL2A Prochlorococcus marinus LL LLI LLI Hba Kettler et al. (2007)
Pro_PAC1 Prochlorococcus marinus LL LLI LLI Hba Biller et al. (2014)
Pro_SB Prochlorococcus marinus HL HLII HLII Lba Biller et al. (2014)
Pro_SS120 Prochlorococcus marinus LL LLII LLII Hba Dufresne et al. (2003)
Pro_SS2 Prochlorococcus marinus LL LLII LLII Hba Biller et al. (2014)
Pro_SS35 Prochlorococcus marinus LL LLII LLII Hba Biller et al. (2014)
Pro_SS51 Prochlorococcus marinus LL LLII LLII Hba Biller et al. (2014)
Pro_SS52 Prochlorococcus marinus LL LLII LLII Hba Biller et al. (2014)
Pro_UH18301 Prochlorococcus marinus HL HLII HLII Lba Unpublished
JBrowse Name Species SubCluster Clade SubClade Pigment type Ref. genomes
Cya_NS01 Cyanobium sp. 5.2 5.2 5.2B 1 Doré et al. (2020)
Cya_PCC6307 Cyanobium gracile 5.2 5.2 5.2B 1 Shih et al. (2013)
Cya_PCC7001 Cyanobium sp. 5.2 5.2 5.2B 1 Shih et al. (2013)
Syn_A15-127 Synechococcus sp. 5.1 WPC1 WPC1 3c Doré et al. (2020)
Syn_A15-24 Synechococcus sp. 5.1 III IIIa 3c Doré et al. (2020)
Syn_A15-28 Synechococcus sp. 5.1 III IIIb 3c Doré et al. (2020)
Syn_A15-44 Synechococcus sp. 5.1 II IIa 2 Doré et al. (2020)
Syn_A15-60 Synechococcus sp. 5.1 VII VIIa 3c Doré et al. (2020)
Syn_A15-62 Synechococcus sp. 5.1 II IIc 3dB Doré et al. (2020)
Syn_A18-25c Synechococcus sp. 5.1 VII VIIa 3c Doré et al. (2020)
Syn_A18-40 Synechococcus sp. 5.1 III IIIa 3dB Doré et al. (2020)
Syn_A18-46.1 Synechococcus sp. 5.1 III IIIa 3c Doré et al. (2020)
Syn_BIOS-E4-1 Synechococcus sp. 5.1 CRD1 CRD1b 3cA Doré et al. (2020)
Syn_BIOS-U3-1 Synechococcus sp. 5.1 CRD1 CRD1a 3dA Doré et al. (2020)
Syn_BL107 Synechococcus sp. 5.1 IV IVa 3dA Dufresne et al. (2008)
Syn_BMK-MC-1 Synechococcus sp. 5.1 V V 2 Doré et al. (2020)
Syn_BOUM118 Synechococcus sp. 5.1 III IIIa 3c Doré et al. (2020)
Syn_CB0101 Synechococcus sp. 5.2 5.2 5.2A 1 Marsan et al. (2014)
Syn_CB0205 Synechococcus sp. 5.2 5.2 5.2A 2 Coutinho et al. (2016)
Syn_CC9311 Synechococcus sp. 5.1 I Ia 3dA Palenik et al. (2006)
Syn_CC9605 Synechococcus sp. 5.1 II IIc 3c Dufresne et al. (2008)
Syn_CC9616 Synechococcus sp. 5.1 EnvC EnvC 3f Lee et al. (2019)
Syn_CC9902 Synechococcus sp. 5.1 IV IVa 3dA Dufresne et al. (2008)
Syn_KORDI-100 Synechococcus sp. 5.1 UC-A UC-A 3f Lee et al. (2019)###Doré et al. (2020)
Syn_KORDI-49 Synechococcus sp. 5.1 WPC1 WPC1 3aA Lee et al. (2019)###Doré et al. (2020)
Syn_KORDI-52 Synechococcus sp. 5.1 II IIa 3bB Lee et al. (2019)###Doré et al. (2020)
Syn_M16.1 Synechococcus sp. 5.1 II IIa 3a Doré et al. (2020)
Syn_MEDNS5 Synechococcus sp. 5.1 VI VIa 3c Doré et al. (2020)
Syn_MINOS11 Synechococcus sp. 5.3 5.3 5.3 3dB Doré et al. (2020)
Syn_MITS9220 Synechococcus sp. 5.1 CRD1 CRD1a 3dA Doré et al. (2020)
Syn_MVIR-18-1 Synechococcus sp. 5.1 I Ib 3aA Doré et al. (2020)
Syn_NOUM97013 Synechococcus sp. 5.1 VII VIIb 3a Doré et al. (2020)
Syn_PROS-7-1 Synechococcus sp. 5.1 VI VIb 2 Doré et al. (2020)
Syn_PROS-9-1 Synechococcus sp. 5.1 I Ib 3dA Doré et al. (2020)
Syn_PROS-U-1 Synechococcus sp. 5.1 II IIh 3dB Doré et al. (2020)
Syn_RCC307 Synechococcus sp. 5.3 5.3 5.3 3eA Dufresne et al. (2008)
Syn_ROS8604 Synechococcus sp. 5.1 I Ib 3a Doré et al. (2020)
Syn_RS9902 Synechococcus sp. 5.1 II IIa 3c Doré et al. (2020)
Syn_RS9907 Synechococcus sp. 5.1 II IIa 3a Doré et al. (2020)
Syn_RS9909 Synechococcus sp. 5.1 VIII VIII 1 Doré et al. (2020)
Syn_RS9915 Synechococcus sp. 5.1 III IIIa 3dB Doré et al. (2020)
Syn_RS9916 Synechococcus sp. 5.1 IX IX 3dA Dufresne et al. (2008)
Syn_RS9917 Synechococcus sp. 5.1 VIII VIII 1 Dufresne et al. (2008)
Syn_SYN20 Synechococcus sp. 5.1 I Ib 3a Doré et al. (2020)
Syn_TAK9802 Synechococcus sp. 5.1 II IIa 3a Doré et al. (2020)
Syn_WH5701 Synechococcus sp. 5.2 5.2 5.2B 1 Dufresne et al. (2008)
Syn_WH7803 Synechococcus sp. 5.1 V V 3a Dufresne et al. (2008)
Syn_WH7805 Synechococcus sp. 5.1 VI VIa 2 Dufresne et al. (2008)
Syn_WH8016 Synechococcus sp. 5.1 I Ib 3aA Lee et al. (2019)
Syn_WH8020 Synechococcus sp. 5.1 I Ia 3dA Mackey et al. (2015)
Syn_WH8101 Synechococcus sp. 5.1 VIII VIII 1 n.a.
Syn_WH8102 Synechococcus sp. 5.1 III IIIa 3c Palenik et al. (2003)
Syn_WH8103 Synechococcus sp. 5.1 III IIIa 3bB Farrant et al. (2015)###Doré et al. (2020)
Syn_WH8109 Synechococcus sp. 5.1 II IIa 3bB Doron et al. (2016)
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