Cyanorak | Genomic Search
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Phyletic Pattern Search
Quick Search Parameters
Search for
Match type
Pattern
Exact
Search in
Cluster Number
Cluster Gene Name
Cluster Synonym(s)
CDS IDs
CDS Name
CDS Synonym(s)
Product
RNA IDs
RNA Name
Advanced Search Parameters
Search for
Match type
Pattern
Exact
Cluster Search Fields
Identifiers
Cluster Number
Cyanorak V1 Cluster Number
Annotations
CDS Name
Cluster Synonym(s)
Product
Locustags in Model Organisms
COG/NOG
BactNOG
CyaNOG
CyOG
EC Number
K Number
TIGR Role
TIGRFam
Cyanorak Role
pFam
Interpro Domain
ProSite Pattern
ProSite Profile
Comments
GO Terms
biological_process
cellular_component
molecular_function
CDS Search Fields
Identifiers
ORF ID
Cyanorak ORF ID
Cyanorak V1 Locus Tag
Cyanorak V2 Locus Tag
GenBank Locus Tag
Alternative Locus Tag
Proportal Locus Tag
GenBank Accession
NCBI GI
RefSeq
MicrobesOnLine
Annotations
CDS Name
CDS Name Synonym(s)
Product
COG/NOG
BactNOG
CyaNOG
CyOG
Cyanobase
EC Number
K Number
TIGR Role
TIGRFam
pFam
Interpro Domain
ProSite Pattern
ProSite Profile
Comments
GO Terms
biological_process
cellular_component
molecular_function
Qualifiers
artificial_location
codon_start
color
colour
db_xref
function
gene_synonym
inference
label
modified_by
note
protein_id
pseudo
ribosomal_slippage
transl_table
RNA Search Fields
Type
RNA Type
Identifiers
Cyanorak ORF ID
Cyanorak V2 Locus Tag
GenBank Locus Tag
Alternative Locus Tag
Proportal Locus Tag
MicrobesOnLine
Annotations
RNA Name
Synonym
Class
Function
Comments
All Genomes
Prochlorococcus
HL
LL
HLI
HLII
HLIII
HLIV
LLI
LLII
LLIII
LLIV
EQPAC1
MED4
MIT9515
AS9601
GP2
MIT0604
MIT9107
MIT9116
MIT9123
MIT9201
MIT9202
MIT9215
MIT9301
MIT9302
MIT9311
MIT9312
MIT9314
MIT9321
MIT9322
MIT9401
SB
UH18301
HNLC2
HNLC1
MIT0801
NATL1A
NATL2A
PAC1
LG
MIT0602
MIT0603
SS120
SS2
SS35
SS51
SS52
MIT0601
MIT9211
MIT0701
MIT0702
MIT0703
MIT9303
MIT9313
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
Synechococcus/Cyanobium
Subcluster 5.1
Subcluster 5.2
Subcluster 5.3
I
II
III
IV
V
VI
VII
VIII
IX
CRD1
UC-A
WPC1
XX
Ia
Ib
IIa
IIb
IIc
IIh
II-WPC2
IIIa
IIIb
IVa
VIa
VIb
CC9311
WH8020
MVIR-18-1
PROS-9-1
ROS8604
SYN20
WH8016
A15-44
M16.1
RS9902
RS9907
TAK9802
WH8109
A15-62
CC9605
PROS-U-1
KORDI-52
A15-24
A18-40
A18-46.1
BOUM118
RS9915
WH8102
WH8103
A15-28
BL107
CC9902
BMK-MC-1
WH7803
MEDNS5
WH7805
PROS-7-1
A15-60
A18-25c
NOUM97013
RS9909
RS9917
WH8101
RS9916
BIOS-E4-1
BIOS-U3-1
MITS9220
KORDI-100
A15-127
KORDI-49
CC9616
CB0101
CB0205
NS01
PCC6307
PCC7001
WH5701
MINOS11
RCC307
3dA
3dA
3aA
3dA
3a
3a
3aA
2
3a
3c
3a
3a
3bB
3dB
3c
3dB
3bB
3c
3dB
3c
3c
3dB
3c
3bB
3c
3dA
3dA
2
3a
3c
2
2
3c
3c
3a
1
1
1
3dA
3cA
3dA
3dA
3f
3c
3aA
3f
1
2
1
1
1
1
3dB
3eA
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
Phyletic Pattern Search Parameters
Cluster Selection
Specific gene set
STRICT (display CLOGs shared by ALL AND ONLY the selected strains)
LARGE (display CLOGs shared by more than __ % of the selected strains and less than __ % of other strains):
95 - 5 %
90 - 10 %
85 - 15 %
80 - 20 %
75 - 25 %
Core genome
STRICT (display CLOGs shared by 100 % of the selected strains AND potentially other strains)
LARGE (display CLOGs shared by at least __ % of the selected strains AND potentially other strains):
95 %
90 %
85 %
80 %
75 %
Accessory genome
STRICT (display CLOGs present in 1 to n-1 genomes of the selected strains AND potentially other strains)
LARGE (display CLOGs present in at least 1 genome of the selected strains and less than __ % of the selected strains AND potentially other strains):
95 %
90 %
85 %
80 %
75 %
Genomes Selection
Genome Quality
Complete
MAG
WGS high quality
WGS low quality
Genotypes / Pigment Types
Prochlorococcus
HL
LL
HLI
HLII
HLIII
HLIV
LLI
LLII
LLIII
LLIV
EQPAC1
MED4
MIT9515
AS9601
GP2
MIT0604
MIT9107
MIT9116
MIT9123
MIT9201
MIT9202
MIT9215
MIT9301
MIT9302
MIT9311
MIT9312
MIT9314
MIT9321
MIT9322
MIT9401
SB
UH18301
HNLC2
HNLC1
MIT0801
NATL1A
NATL2A
PAC1
LG
MIT0602
MIT0603
SS120
SS2
SS35
SS51
SS52
MIT0601
MIT9211
MIT0701
MIT0702
MIT0703
MIT9303
MIT9313
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Lba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
Hba
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
Synechococcus/Cyanobium
Subcluster 5.1
Subcluster 5.2
Subcluster 5.3
I
II
III
IV
V
VI
VII
VIII
IX
CRD1
UC-A
WPC1
XX
Ia
Ib
IIa
IIb
IIc
IIh
II-WPC2
IIIa
IIIb
IVa
VIa
VIb
CC9311
WH8020
MVIR-18-1
PROS-9-1
ROS8604
SYN20
WH8016
A15-44
M16.1
RS9902
RS9907
TAK9802
WH8109
A15-62
CC9605
PROS-U-1
KORDI-52
A15-24
A18-40
A18-46.1
BOUM118
RS9915
WH8102
WH8103
A15-28
BL107
CC9902
BMK-MC-1
WH7803
MEDNS5
WH7805
PROS-7-1
A15-60
A18-25c
NOUM97013
RS9909
RS9917
WH8101
RS9916
BIOS-E4-1
BIOS-U3-1
MITS9220
KORDI-100
A15-127
KORDI-49
CC9616
CB0101
CB0205
NS01
PCC6307
PCC7001
WH5701
MINOS11
RCC307
3dA
3dA
3aA
3dA
3a
3a
3aA
2
3a
3c
3a
3a
3bB
3dB
3c
3dB
3bB
3c
3dB
3c
3c
3dB
3c
3bB
3c
3dA
3dA
2
3a
3c
2
2
3c
3c
3a
1
1
1
3dA
3cA
3dA
3dA
3f
3c
3aA
3f
1
2
1
1
1
1
3dB
3eA
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0