Cyanorak | Organisms

JBrowse Name Species SubCluster/ Phototype Clade SubClade Ecotype/ESTU Pigment type Sequencing center Genome status GenBank Acc. RefSeq Acc. Genome size Contigs CDS rRNA tRNA GC %
JBrowse Pro_AS9601 Prochlorococcus marinus HL HLII HLII HLIIA Lba JCVI Complete CP000551 NC_008816 1,669,886 1 1,926 3 37 31.3
JBrowse Pro_EQPAC1 Prochlorococcus marinus HL HLI HLI HLIA Lba MIT BioMicro Center WGS high quality JNAG00000000 NZ_JNAG00000000 1,655,089 1 1,952 3 37 30.8
JBrowse Pro_GP2 Prochlorococcus marinus HL HLII HLII HLIID Lba MIT BioMicro Center WGS high quality JNAH00000000 NZ_JNAH00000000 1,624,810 1 1,880 3 36 31.2
JBrowse Pro_HNLC1 Prochlorococcus marinus HL HLIV HLIV HLIVA Lba JCVI MAG GL947594.1 1,569,623 1 2,028 3 34 29.8
JBrowse Pro_HNLC2 Prochlorococcus marinus HL HLIII HLIII HLIIIA Lba JCVI MAG GL947595.1 1,484,494 1 1,803 3 33 30.3
JBrowse Pro_LG Prochlorococcus marinus LL LLII LLII LLII-IIIA Hba MIT BioMicro Center WGS high quality JNAT00000000 NZ_JNAT00000000 1,754,713 1 1,976 3 40 36.4
JBrowse Pro_MED4 Prochlorococcus marinus HL HLI HLI HLIA Lba JGI Complete BX548174 NC_005072 1,657,991 1 1,962 3 37 30.8
JBrowse Pro_MIT0601 Prochlorococcus marinus LL LLIII LLIII LLII-IIIA Hba MIT BioMicro Center WGS high quality JNAU00000000 NZ_JNAU00000000 1,707,592 1 1,926 3 39 37.0
JBrowse Pro_MIT0602 Prochlorococcus marinus LL LLII LLII LLII-IIIA Hba MIT BioMicro Center WGS high quality JNAV00000000 NZ_JNAV00000000 1,751,318 1 1,987 3 40 36.3
JBrowse Pro_MIT0603 Prochlorococcus marinus LL LLII LLII LLII-IIIA Hba MIT BioMicro Center WGS high quality JNAW00000000 NZ_JNAW00000000 1,752,782 1 2,010 4 40 36.3
JBrowse Pro_MIT0604 Prochlorococcus marinus HL HLII HLII HLIIA Lba MIT BioMicro Center/Yale Center for Genome Analysis Complete CP007753 NZ_CP007753 1,780,061 1 2,076 3 36 31.2
JBrowse Pro_MIT0701 Prochlorococcus marinus LL LLIV LLIV LLIVA Hba MIT BioMicro Center WGS high quality JNBA00000000 NZ_JNBA00000000 2,595,171 1 3,050 5 42 50.6
JBrowse Pro_MIT0702 Prochlorococcus marinus LL LLIV LLIV LLIVA Hba MIT BioMicro Center WGS high quality JNBB00000000 NZ_JNBB00000000 2,586,057 1 3,038 5 42 50.6
JBrowse Pro_MIT0703 Prochlorococcus marinus LL LLIV LLIV LLIVA Hba MIT BioMicro Center WGS high quality JNBC00000000 NZ_JNBC00000000 2,578,057 1 3,026 5 42 50.6
JBrowse Pro_MIT0801 Prochlorococcus marinus LL LLI LLI LLIA Hba MIT BioMicro Center/Yale Center for Genome Analysis Complete CP007754 NZ_CP007754 1,929,203 1 2,291 3 40 34.9
JBrowse Pro_MIT9107 Prochlorococcus marinus HL HLII HLII HLIIB Lba MIT BioMicro Center WGS high quality JNAI00000000 NZ_JNAI00000000 1,700,537 1 1,974 3 36 31.0
JBrowse Pro_MIT9116 Prochlorococcus marinus HL HLII HLII HLIIB Lba MIT BioMicro Center WGS high quality JNAJ00000000 NZ_JNAJ00000000 1,686,448 1 1,962 3 36 31.0
JBrowse Pro_MIT9123 Prochlorococcus marinus HL HLII HLII HLIIB Lba MIT BioMicro Center WGS high quality JNAK00000000 NZ_JNAK00000000 1,698,598 1 1,991 3 36 31.0
JBrowse Pro_MIT9201 Prochlorococcus marinus HL HLII HLII HLIIA Lba MIT BioMicro Center WGS high quality JNAL00000000 NZ_JNAL00000000 1,673,653 1 1,973 3 37 31.3
JBrowse Pro_MIT9202 Prochlorococcus marinus HL HLII HLII HLIIA Lba JCVI WGS high quality ACDW00000000 NZ_ACDW00000000. 1,691,453 1 1,945 3 36 31.1
JBrowse Pro_MIT9211 Prochlorococcus marinus LL LLIII LLIII LLII-IIIA Hba JGI Complete CP000878 NC_009976 1,688,963 1 1,862 3 40 38.0
JBrowse Pro_MIT9215 Prochlorococcus marinus HL HLII HLII HLIIA Lba JGI Complete CP000825 NC_009840 1,738,790 1 1,991 3 38 31.1
JBrowse Pro_MIT9301 Prochlorococcus marinus HL HLII HLII HLIIA Lba JCVI Complete CP000576 NC_009091 1,641,879 1 1,910 3 36 31.3
JBrowse Pro_MIT9302 Prochlorococcus marinus HL HLII HLII HLIIB Lba MIT BioMicro Center WGS high quality JNAM00000000 NZ_JNAM00000000 1,746,143 1 2,014 4 36 31.1
JBrowse Pro_MIT9303 Prochlorococcus sp. LL LLIV LLIV LLIVA Hba JCVI Complete CP000554 2,682,675 1 2,984 6 44 50.0
JBrowse Pro_MIT9311 Prochlorococcus marinus HL HLII HLII HLIIA Lba MIT BioMicro Center WGS high quality JNAN00000000 NZ_JNAN00000000 1,711,864 1 1,980 3 36 31.2
JBrowse Pro_MIT9312 Prochlorococcus marinus HL HLII HLII HLIIA Lba JGI Complete CP000111 NC_007577 1,709,204 1 1,962 3 36 31.2
JBrowse Pro_MIT9313 Prochlorococcus sp. LL LLIV LLIV LLIVA Hba JGI Complete BX548175 NC_005071 2,410,874 1 2,830 6 45 50.7
JBrowse Pro_MIT9314 Prochlorococcus marinus HL HLII HLII HLIIA Lba MIT BioMicro Center WGS high quality JNAO00000000 NZ_JNAO00000000 1,691,306 1 1,983 3 36 31.2
JBrowse Pro_MIT9321 Prochlorococcus marinus HL HLII HLII HLIIA Lba MIT BioMicro Center WGS high quality JNAP00000000 NZ_JNAP00000000 1,659,114 1 1,952 3 36 31.2
JBrowse Pro_MIT9322 Prochlorococcus marinus HL HLII HLII HLIIA Lba MIT BioMicro Center WGS high quality JNAQ00000000 NZ_JNAQ00000000 1,658,050 1 1,952 4 35 31.2
JBrowse Pro_MIT9401 Prochlorococcus marinus HL HLII HLII HLIIA Lba MIT BioMicro Center WGS high quality JNAR00000000 NZ_JNAR00000000 1,667,608 1 1,968 4 36 31.2
JBrowse Pro_MIT9515 Prochlorococcus marinus HL HLI HLI HLIC Lba JCVI Complete CP000552 NC_008817 1,704,176 1 1,916 3 37 30.8
JBrowse Pro_NATL1A Prochlorococcus marinus LL LLI LLI LLIA Hba JGI Complete CP000553 NC_008819 1,864,731 1 2,194 3 38 35.0
JBrowse Pro_NATL2A Prochlorococcus marinus LL LLI LLI LLIA Hba JGI Complete CP000095 NC_007335.2 1,842,899 1 2,162 3 38 35.1
JBrowse Pro_PAC1 Prochlorococcus marinus LL LLI LLI LLIA Hba MIT BioMicro Center WGS high quality JNAX00000000 NZ_JNAX00000000 1,842,113 1 2,256 3 38 35.1
JBrowse Pro_SB Prochlorococcus marinus HL HLII HLII HLIIA Lba MIT BioMicro Center WGS high quality JNAS00000000 NZ_JNAS00000000 1,669,973 1 1,928 3 36 31.5
JBrowse Pro_SS120 Prochlorococcus marinus LL LLII LLII LLII-IIIA Hba Genoscope Complete AE017126.1 NC_005042.1 1,751,081 1 1,937 3 40 36.4
JBrowse Pro_SS2 Prochlorococcus marinus LL LLII LLII LLII-IIIA Hba MIT BioMicro Center WGS high quality JNAY00000000 NZ_JNAY00000000 1,753,672 1 1,986 3 40 36.4
JBrowse Pro_SS35 Prochlorococcus marinus LL LLII LLII LLII-IIIA Hba MIT BioMicro Center WGS high quality JNAZ00000000 NZ_JNAZ00000000 1,751,415 1 1,977 3 40 36.4
JBrowse Pro_SS51 Prochlorococcus marinus LL LLII LLII LLII-IIIA Hba MIT BioMicro Center WGS high quality JNBD00000000 NZ_JNBD00000000 1,747,527 1 1,976 4 40 36.4
JBrowse Pro_SS52 Prochlorococcus marinus LL LLII LLII LLII-IIIA Hba MIT BioMicro Center WGS high quality JNBE00000000 NZ_JNBE00000000 1,755,103 1 1,986 3 40 36.4
JBrowse Pro_UH18301 Prochlorococcus marinus HL HLII HLII HLIID Lba JCVI WGS low quality SRX019026 1,659,269 1 2,028 3 36 31.0

Download all organism information as tab-separated csv.

JBrowse Name Species SubCluster/ Phototype Clade SubClade Ecotype/ESTU Pigment type Sequencing center Genome status GenBank Acc. RefSeq Acc. Genome size Contigs CDS rRNA tRNA GC %
JBrowse Cya_CB0101 Cyanobium sp. 5.2 5.2 5.2 5.2A 1 TIGR WGS low quality ADXL00000000 2,691,045 1 3,013 0 40 64.2
JBrowse Cya_CB0205 Cyanobium sp. 5.2 5.2 5.2 5.2A 2 TIGR WGS low quality ADXM00000000 NZ_ADXM00000000 2,431,158 1 2,725 4 42 52.0
JBrowse Cya_NS01 Cyanobium sp. 5.2 5.2 5.2 5.2A 1 Genoscope Complete CP047940 NZ_CP047940 2,748,087 1 2,936 9 46 67.9
JBrowse Cya_PCC6307 Cyanobium gracile 5.2 5.2 5.2 5.2A 1 JGI Complete CP003495 NC_019675.1 3,342,364 1 3,302 6 44 68.7
JBrowse Cya_PCC7001 Cyanobium sp. 5.2 5.2 5.2 5.2A 1 JCVI WGS high quality ABSE01000000 NZ_ABSE01000000 2,832,412 1 2,827 9 46 68.7
JBrowse Cya_WH5701 Cyanobium sp. 5.2 5.2 5.2 5.2A 1 JCVI WGS low quality AANO00000000 NZ_AANO00000000 3,051,556 1 3,099 8 46 66.0
JBrowse Syn_A15-127 Synechococcus sp. 5.1 WPC1 WPC1 WPC1A 3c Genoscope Complete CP047948 NZ_CP047948 2,543,463 1 2,819 6 44 60.6
JBrowse Syn_A15-24 Synechococcus sp. 5.1 III IIIa IIIA 3c CGR, Liverpool, UK Complete CP047960 NZ_CP047960 2,305,373 1 2,709 6 45 59.6
JBrowse Syn_A15-28 Synechococcus sp. 5.1 III IIIb IIIA 3c Genoscope Complete CP047931 NZ_CP047931 2,341,586 1 2,756 6 45 60.1
JBrowse Syn_A15-44 Synechococcus sp. 5.1 II IIa IIA 2 Genoscope Complete CP047938 NZ_CP047938 2,621,965 1 3,141 9 46 60.8
JBrowse Syn_A15-60 Synechococcus sp. 5.1 VII VII VIIA 3c Genoscope Complete CP047933 NZ_CP047933 2,543,402 1 3,027 6 44 58.2
JBrowse Syn_A15-62 Synechococcus sp. 5.1 II IIc IIA 3dB Genoscope Complete CP047950 NZ_CP047950 2,294,140 1 2,777 6 44 59.9
JBrowse Syn_A18-25c Synechococcus sp. 5.1 VII VII VIIA 3c CGR, Liverpool, UK Complete CP047957 NZ_CP047957 2,511,360 1 2,988 6 44 58.2
JBrowse Syn_A18-40 Synechococcus sp. 5.1 III IIIa IIIA 3dB CGR, Liverpool, UK Complete CP047956 NZ_CP047956 2,401,547 1 2,781 6 45 59.5
JBrowse Syn_A18-46.1 Synechococcus sp. 5.1 III IIIa IIIA 3c CGR, Liverpool, UK Complete CP047955 NZ_CP047955 2,471,770 1 2,899 6 46 59.3
JBrowse Syn_BIOS-E4-1 Synechococcus sp. 5.1 CRD1 CRD1 CRD1C 3cA Genoscope WGS high quality CP047935 NZ_CP047935 3,314,220 1 4,342 6 44 55.1
JBrowse Syn_BIOS-U3-1 Synechococcus sp. 5.1 CRD1 CRD1 CRD1B 3dA Genoscope Complete CP047936 NZ_CP047936 2,710,834 1 3,395 6 44 55.0
JBrowse Syn_BL107 Synechococcus sp. 5.1 IV IVa IVA 3dA JCVI WGS high quality AATZ00000000 NZ_AATZ00000000 2,285,035 1 2,504 6 42 55.0
JBrowse Syn_BMK-MC-1 Synechococcus sp. 5.1 V V VA 2 Genoscope Complete CP047939 NZ_CP047939 2,601,150 1 3,044 6 44 60.4
JBrowse Syn_BOUM118 Synechococcus sp. 5.1 III IIIa IIIA 3c Genoscope WGS high quality CP047947 NZ_CP047947 2,326,334 1 2,742 6 44 59.8
JBrowse Syn_CC9311 Synechococcus sp. 5.1 I Ia IA 3dA JGI Complete CP000435 NC_008319 2,606,749 1 2,930 6 44 52.5
JBrowse Syn_CC9605 Synechococcus sp. 5.1 II IIc IIA 3c JGI Complete CP000110 NC_007516 2,510,660 1 2,740 6 44 59.2
JBrowse Syn_CC9616 Synechococcus sp. 5.1 XX XX XXA 3f JGI WGS high quality AZXL00000000 NZ_KI911558.1 2,645,910 1 3,199 3 42 56.5
JBrowse Syn_CC9902 Synechococcus sp. 5.1 IV IVa IVA 3dA JGI Complete CP000097 NC_007513 2,234,829 1 2,392 6 44 54.2
JBrowse Syn_KORDI-100 Synechococcus sp. 5.1 UC-A UC-A UC-AA 3f JGI Complete CP006269 NZ_CP006269 2,789,000 1 3,013 3 43 57.5
JBrowse Syn_KORDI-49 Synechococcus sp. 5.1 WPC1 WPC1 WPC1A 3aA JGI Complete CP006270 NZ_CP006270 2,585,813 1 2,673 6 44 61.4
JBrowse Syn_KORDI-52 Synechococcus sp. 5.1 II II-WPC2 IIA 3bB JGI Complete CP006271 NZ_CP006271 2,572,069 1 2,787 9 46 59.1
JBrowse Syn_M16.1 Synechococcus sp. 5.1 II IIa IIA 3a Genoscope Complete CP047954 NZ_CP047954 2,112,236 1 2,496 6 45 61.4
JBrowse Syn_MEDNS5 Synechococcus sp. 5.1 VI VIa VIA 3c Genoscope Complete CP047952 NZ_CP047952 2,284,343 1 2,724 6 45 59.1
JBrowse Syn_MINOS11 Synechococcus sp. 5.3 5.3 5.3 5.3A 3dB Genoscope Complete CP047953 NZ_CP047953 2,284,343 1 2,673 3 42 60.5
JBrowse Syn_MITS9220 Synechococcus sp. 5.1 CRD1 CRD1 CRD1A 3dA CGR, Liverpool, UK Complete CP047958 2,424,175 1 3,021 6 44 56.4
JBrowse Syn_MVIR-18-1 Synechococcus sp. 5.1 I Ib IA 3aA Genoscope Complete CP047942 NZ_CP047942 2,451,974 1 2,997 6 44 53.4
JBrowse Syn_NOUM97013 Synechococcus sp. 5.1 VII VII VIIA 3a Genoscope Complete CP047941 NZ_CP047941 2,552,712 1 2,915 6 45 58.8
JBrowse Syn_PROS-7-1 Synechococcus sp. 5.1 VI VIb VIA 2 Genoscope Complete CP047945 NZ_CP047945 2,565,218 1 2,834 6 45 59.3
JBrowse Syn_PROS-9-1 Synechococcus sp. 5.1 I Ib IA 3dA CGR, Liverpool, UK Complete CP047961 NZ_CP047961 2,273,940 1 2,717 6 45 53.9
JBrowse Syn_PROS-U-1 Synechococcus sp. 5.1 II IIh IIB 3dB Genoscope Complete CP047951 NZ_CP047951 2,576,003 1 3,092 6 45 58.4
JBrowse Syn_RCC307 Synechococcus sp. 5.3 5.3 5.3 5.3A 3eA Genoscope Complete CT978603 NC_009482 2,224,915 1 2,556 3 42 60.8
JBrowse Syn_ROS8604 Synechococcus sp. 5.1 I Ib IA 3a Genoscope Complete CP047946 NZ_CP047946 2,876,904 1 3,696 6 44 54.0
JBrowse Syn_RS9902 Synechococcus sp. 5.1 II IIa IIA 3c Genoscope Complete CP047949 NZ_CP047949 2,481,217 1 2,928 9 46 59.8
JBrowse Syn_RS9907 Synechococcus sp. 5.1 II IIa IIA 3a Genoscope Complete CP047944 NZ_CP047944 2,581,635 1 2,951 9 47 60.4
JBrowse Syn_RS9909 Synechococcus sp. 5.1 VIII VIII VIIIA 1 Genoscope Complete CP047943 NZ_CP047943 2,603,169 1 2,811 6 45 64.4
JBrowse Syn_RS9915 Synechococcus sp. 5.1 III IIIa IIIA 3dB Genoscope WGS high quality CP047934 NZ_CP047934 2,417,983 1 2,853 6 44 59.5
JBrowse Syn_RS9916 Synechococcus sp. 5.1 IX IX IXA 3dA JCVI WGS high quality AAUA00000000 NZ_AAUA00000000 2,664,874 1 2,884 6 42 59.8
JBrowse Syn_RS9917 Synechococcus sp. 5.1 VIII VIII VIIIA 1 JCVI WGS high quality AANP00000000 NZ_AANP00000000 2,584,919 1 2,782 6 42 64.8
JBrowse Syn_SYN20 Synechococcus sp. 5.1 I Ib IA 3a CGR, Liverpool, UK Complete CP047959 NZ_CP047959 2,728,628 1 3,349 6 44 53.4
JBrowse Syn_TAK9802 Synechococcus sp. 5.1 II IIa IIA 3a Genoscope Complete CP047937 NZ_CP047937 2,190,394 1 2,649 6 45 60.8
JBrowse Syn_WH7803 Synechococcus sp. 5.1 V V VA 3a Genoscope Complete CT971583 NC_009481.1 2,366,981 1 2,578 6 44 60.2
JBrowse Syn_WH7805 Synechococcus sp. 5.1 VI VIa VIA 2 JCVI WGS high quality AAOK00000000 NZ_AAOK00000000 2,627,147 2 2,859 6 45 57.5
JBrowse Syn_WH8016 Synechococcus sp. 5.1 I Ib IA 3aA JGI WGS high quality AGIK01000000 NZ_AGIK00000000 2,695,643 1 3,000 3 43 54.1
JBrowse Syn_WH8020 Synechococcus sp. 5.1 I Ia IA 3dA WGS low quality CP011941 NZ_CP011941 2,290,798 1 3,113 0 38 53.3
JBrowse Syn_WH8101 Synechococcus sp. 5.1 VIII VIII VIIIA 1 Genoscope Complete CP047932 2,623,023 1 2,891 6 44 63.3
JBrowse Syn_WH8102 Synechococcus sp. 5.1 III IIIa IIIA 3c JGI Complete BX548020 NC_005070 2,434,429 1 2,776 6 44 59.4
JBrowse Syn_WH8103 Synechococcus sp. 5.1 III IIIa IIIA 3bB Genoscope Complete LN847356 NZ_LN847356 2,429,688 1 2,835 6 46 59.5
JBrowse Syn_WH8109 Synechococcus sp. 5.1 II IIb IIA 3bB JCVI WGS high quality CP006882 NZ_CP006882 2,111,515 1 2,613 6 44 60.1

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Strain locations

Prochlorococcus Color Codes

HL LL
HLI HLII HLIII HLIV LLI LLII LLIII LLIV

Synechococcus / Cyanobium Color Codes

5.1 5.2 5.3
I II III IV V VI VII VIII IX CRD1 UC-A WPC1 XX
Ia Ib IIa IIb IIc IIh II-WPC2 IIIa IIIb IVa VIa VIb