Cyanorak

Prochlorococcus
Synechococcus/Cyanobium

Name	Species	SubCluster	Clade	SubClade	Ecotype/ESTU	Pigment type	Ref. genomes	Ref. transcriptomes
Pro_AS9601	Prochlorococcus marinus	HL	HLII	HLII	HLIIA	Lba	Kettler et al. (2007)
Pro_EQPAC1	Prochlorococcus marinus	HL	HLI	HLI	HLIA	Lba	Biller et al. (2014)
Pro_GP2	Prochlorococcus marinus	HL	HLII	HLII	HLIID	Lba	Biller et al. (2014)
Pro_HNLC1	Prochlorococcus marinus	HL	HLIV	HLIV	HLIVA	Lba	Rusch et al. (2010)
Pro_HNLC2	Prochlorococcus marinus	HL	HLIII	HLIII	HLIIIA	Lba	Rusch et al. (2010)
Pro_LG	Prochlorococcus marinus	LL	LLII	LLII	LLII-IIIA	Hba	Biller et al. (2014)
Pro_MED4	Prochlorococcus marinus	HL	HLI	HLI	HLIA	Lba	Rocap et al. (2003)	Bagby and Chisholm 2015 Thompson et al. 2011 Thompson et al. 2016
Pro_MIT0601	Prochlorococcus marinus	LL	LLIII	LLIII	LLII-IIIA	Hba	Biller et al. (2014)
Pro_MIT0602	Prochlorococcus marinus	LL	LLII	LLII	LLII-IIIA	Hba	Biller et al. (2014)
Pro_MIT0603	Prochlorococcus marinus	LL	LLII	LLII	LLII-IIIA	Hba	Biller et al. (2014)
Pro_MIT0604	Prochlorococcus marinus	HL	HLII	HLII	HLIIA	Lba	Biller et al. (2014)
Pro_MIT0701	Prochlorococcus marinus	LL	LLIV	LLIV	LLIVA	Hba	Biller et al. (2014)
Pro_MIT0702	Prochlorococcus marinus	LL	LLIV	LLIV	LLIVA	Hba	Biller et al. (2014)
Pro_MIT0703	Prochlorococcus marinus	LL	LLIV	LLIV	LLIVA	Hba	Biller et al. (2014)
Pro_MIT0801	Prochlorococcus marinus	LL	LLI	LLI	LLIA	Hba	Biller et al. (2014)
Pro_MIT9107	Prochlorococcus marinus	HL	HLII	HLII	HLIIB	Lba	Biller et al. (2014)
Pro_MIT9116	Prochlorococcus marinus	HL	HLII	HLII	HLIIB	Lba	Biller et al. (2014)
Pro_MIT9123	Prochlorococcus marinus	HL	HLII	HLII	HLIIB	Lba	Biller et al. (2014)
Pro_MIT9201	Prochlorococcus marinus	HL	HLII	HLII	HLIIA	Lba	Biller et al. (2014)
Pro_MIT9202	Prochlorococcus marinus	HL	HLII	HLII	HLIIA	Lba	Biller et al. (2014)
Pro_MIT9211	Prochlorococcus marinus	LL	LLIII	LLIII	LLII-IIIA	Hba	Kettler et al. (2007)
Pro_MIT9215	Prochlorococcus marinus	HL	HLII	HLII	HLIIA	Lba	Kettler et al. (2007)
Pro_MIT9301	Prochlorococcus marinus	HL	HLII	HLII	HLIIA	Lba	Kettler et al. (2007)
Pro_MIT9302	Prochlorococcus marinus	HL	HLII	HLII	HLIIB	Lba	Biller et al. (2014)
Pro_MIT9303	Prochlorococcus sp.	LL	LLIV	LLIV	LLIVA	Hba	Kettler et al. (2007)
Pro_MIT9311	Prochlorococcus marinus	HL	HLII	HLII	HLIIA	Lba	Biller et al. (2014)
Pro_MIT9312	Prochlorococcus marinus	HL	HLII	HLII	HLIIA	Lba	Coleman et al. (2006)	Tetu et al. 2019
Pro_MIT9313	Prochlorococcus sp.	LL	LLIV	LLIV	LLIVA	Hba	Rocap et al. (2003)	Thompson et al. 2011
Pro_MIT9314	Prochlorococcus marinus	HL	HLII	HLII	HLIIA	Lba	Biller et al. (2014)
Pro_MIT9321	Prochlorococcus marinus	HL	HLII	HLII	HLIIA	Lba	Biller et al. (2014)
Pro_MIT9322	Prochlorococcus marinus	HL	HLII	HLII	HLIIA	Lba	Biller et al. (2014)
Pro_MIT9401	Prochlorococcus marinus	HL	HLII	HLII	HLIIA	Lba	Biller et al. (2014)
Pro_MIT9515	Prochlorococcus marinus	HL	HLI	HLI	HLIC	Lba	Kettler et al. (2007)
Pro_NATL1A	Prochlorococcus marinus	LL	LLI	LLI	LLIA	Hba	Kettler et al. (2007)
Pro_NATL2A	Prochlorococcus marinus	LL	LLI	LLI	LLIA	Hba	Kettler et al. (2007)	Biller et al. 2016 Biller et al. 2018 Tetu et al. 2019
Pro_PAC1	Prochlorococcus marinus	LL	LLI	LLI	LLIA	Hba	Biller et al. (2014)
Pro_SB	Prochlorococcus marinus	HL	HLII	HLII	HLIIA	Lba	Biller et al. (2014)
Pro_SS120	Prochlorococcus marinus	LL	LLII	LLII	LLII-IIIA	Hba	Dufresne et al. (2003)
Pro_SS2	Prochlorococcus marinus	LL	LLII	LLII	LLII-IIIA	Hba	Biller et al. (2014)
Pro_SS35	Prochlorococcus marinus	LL	LLII	LLII	LLII-IIIA	Hba	Biller et al. (2014)
Pro_SS51	Prochlorococcus marinus	LL	LLII	LLII	LLII-IIIA	Hba	Biller et al. (2014)
Pro_SS52	Prochlorococcus marinus	LL	LLII	LLII	LLII-IIIA	Hba	Biller et al. (2014)
Pro_UH18301	Prochlorococcus marinus	HL	HLII	HLII	HLIID	Lba	Unpublished

Name	Species	SubCluster	Clade	SubClade	Ecotype/ESTU	Pigment type	Ref. genomes	Ref. transcriptomes
Cya_CB0101	Cyanobium sp.	5.2	5.2	5.2	5.2A	1	Marsan et al. (2014)
Cya_CB0205	Cyanobium sp.	5.2	5.2	5.2	5.2A	2	Coutinho et al. (2016)
Cya_NS01	Cyanobium sp.	5.2	5.2	5.2	5.2A	1	Doré et al. (2020)
Cya_PCC6307	Cyanobium gracile	5.2	5.2	5.2	5.2A	1	Shih et al. (2013)
Cya_PCC7001	Cyanobium sp.	5.2	5.2	5.2	5.2A	1	Shih et al. (2013)
Cya_WH5701	Cyanobium sp.	5.2	5.2	5.2	5.2A	1	Dufresne et al. (2008)
Syn_A15-127	Synechococcus sp.	5.1	WPC1	WPC1	WPC1A	3c	Doré et al. (2020)
Syn_A15-24	Synechococcus sp.	5.1	III	IIIa	IIIA	3c	Doré et al. (2020)
Syn_A15-28	Synechococcus sp.	5.1	III	IIIb	IIIA	3c	Doré et al. (2020)
Syn_A15-44	Synechococcus sp.	5.1	II	IIa	IIA	2	Doré et al. (2020)
Syn_A15-60	Synechococcus sp.	5.1	VII	VII	VIIA	3c	Doré et al. (2020)
Syn_A15-62	Synechococcus sp.	5.1	II	IIc	IIA	3dB	Doré et al. (2020)
Syn_A18-25c	Synechococcus sp.	5.1	VII	VII	VIIA	3c	Doré et al. (2020)
Syn_A18-40	Synechococcus sp.	5.1	III	IIIa	IIIA	3dB	Doré et al. (2020)
Syn_A18-46.1	Synechococcus sp.	5.1	III	IIIa	IIIA	3c	Doré et al. (2020)
Syn_BIOS-E4-1	Synechococcus sp.	5.1	CRD1	CRD1	CRD1C	3cA	Doré et al. (2020)
Syn_BIOS-U3-1	Synechococcus sp.	5.1	CRD1	CRD1	CRD1B	3dA	Doré et al. (2020)
Syn_BL107	Synechococcus sp.	5.1	IV	IVa	IVA	3dA	Dufresne et al. (2008)
Syn_BMK-MC-1	Synechococcus sp.	5.1	V	V	VA	2	Doré et al. (2020)
Syn_BOUM118	Synechococcus sp.	5.1	III	IIIa	IIIA	3c	Doré et al. (2020)
Syn_CC9311	Synechococcus sp.	5.1	I	Ia	IA	3dA	Palenik et al. (2006)	Stuart et al. 2009 Tetu et al. 2013
Syn_CC9605	Synechococcus sp.	5.1	II	IIc	IIA	3c	Dufresne et al. (2008)
Syn_CC9616	Synechococcus sp.	5.1	XX	XX	XXA	3f	Lee et al. (2019)
Syn_CC9902	Synechococcus sp.	5.1	IV	IVa	IVA	3dA	Dufresne et al. (2008)
Syn_KORDI-100	Synechococcus sp.	5.1	UC-A	UC-A	UC-AA	3f	Lee et al. (2019) Doré et al. (2020)
Syn_KORDI-49	Synechococcus sp.	5.1	WPC1	WPC1	WPC1A	3aA	Lee et al. (2019) Doré et al. (2020)
Syn_KORDI-52	Synechococcus sp.	5.1	II	II-WPC2	IIA	3bB	Lee et al. (2019) Doré et al. (2020)
Syn_M16.1	Synechococcus sp.	5.1	II	IIa	IIA	3a	Doré et al. (2020)
Syn_MEDNS5	Synechococcus sp.	5.1	VI	VIa	VIA	3c	Doré et al. (2020)
Syn_MINOS11	Synechococcus sp.	5.3	5.3	5.3	5.3A	3dB	Doré et al. (2020)
Syn_MITS9220	Synechococcus sp.	5.1	CRD1	CRD1	CRD1A	3dA	n.a.
Syn_MVIR-18-1	Synechococcus sp.	5.1	I	Ib	IA	3aA	Doré et al. (2020)
Syn_NOUM97013	Synechococcus sp.	5.1	VII	VII	VIIA	3a	Doré et al. (2020)
Syn_PROS-7-1	Synechococcus sp.	5.1	VI	VIb	VIA	2	Doré et al. (2020)
Syn_PROS-9-1	Synechococcus sp.	5.1	I	Ib	IA	3dA	Doré et al. (2020)
Syn_PROS-U-1	Synechococcus sp.	5.1	II	IIh	IIB	3dB	Doré et al. (2020)
Syn_RCC307	Synechococcus sp.	5.3	5.3	5.3	5.3A	3eA	Dufresne et al. (2008)
Syn_ROS8604	Synechococcus sp.	5.1	I	Ib	IA	3a	Doré et al. (2020)
Syn_RS9902	Synechococcus sp.	5.1	II	IIa	IIA	3c	Doré et al. (2020)
Syn_RS9907	Synechococcus sp.	5.1	II	IIa	IIA	3a	Doré et al. (2020)
Syn_RS9909	Synechococcus sp.	5.1	VIII	VIII	VIIIA	1	Doré et al. (2020)
Syn_RS9915	Synechococcus sp.	5.1	III	IIIa	IIIA	3dB	Doré et al. (2020)
Syn_RS9916	Synechococcus sp.	5.1	IX	IX	IXA	3dA	Dufresne et al. (2008)
Syn_RS9917	Synechococcus sp.	5.1	VIII	VIII	VIIIA	1	Dufresne et al. (2008)
Syn_SYN20	Synechococcus sp.	5.1	I	Ib	IA	3a	Doré et al. (2020)
Syn_TAK9802	Synechococcus sp.	5.1	II	IIa	IIA	3a	Doré et al. (2020)
Syn_WH7803	Synechococcus sp.	5.1	V	V	VA	3a	Dufresne et al. (2008)	Blot et al. (2008) Guyet et al. (2020)
Syn_WH7805	Synechococcus sp.	5.1	VI	VIa	VIA	2	Dufresne et al. (2008)
Syn_WH8016	Synechococcus sp.	5.1	I	Ib	IA	3aA	Lee et al. (2019)
Syn_WH8020	Synechococcus sp.	5.1	I	Ia	IA	3dA	Mackey et al. (2015)
Syn_WH8101	Synechococcus sp.	5.1	VIII	VIII	VIIIA	1	n.a.
Syn_WH8102	Synechococcus sp.	5.1	III	IIIa	IIIA	3c	Palenik et al. (2003)	Stuart et al . 2009 Tetu et al. 2009 Dupont et al. 2012 Tetu et al. 2013
Syn_WH8103	Synechococcus sp.	5.1	III	IIIa	IIIA	3bB	Farrant et al. (2015) Doré et al. (2020)
Syn_WH8109	Synechococcus sp.	5.1	II	IIb	IIA	3bB	Doron et al. (2016)

Cyanorak | JBrowse Organism Table