Cyanorak | Organism Details

Concatenated Contigs

Syn_KORDI-49

Description

Species
Synechococcus sp.
Strain
KORDI-49
RCC N°
NCBI Taxonomy ID
585423
Genus
Synechococcus
SubCluster/Phototype
5.1
Clade
WPC1
SubClade
WPC1
Ecotype/ESTU
WPC1A
Pigment Type
3aA
Ocean/Sea
Pacific Ocean
Oceanic Region
East China Sea
Latitude
32°30'0'' N (32.500 °)
Longitude
126°0'0'' E (126.000 °)
Isolation Depth
20
Isolated/Purified by
Choi DH
Isolation Date
2004-03-15
ENVO
00000207
Sequencing Center
JGI
Genome Status
Complete
GenBank Acc.
CP006270
RefSeq Acc.
NZ_CP006270
Genome Size
2,585,813
GC %
61.4
Number of CDS
2,673
Number of rRNA
6
Number of tRNA
44

Reference(s)

Lee et al. (2019)
Doré et al. (2020)

Comments

16S rRNA and ITS phylogenies geographic origin and pigment type of this strain are described in Choi & Noh (2009). See also Choi et al. (2014) for a more recent ITS phylogeny.

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Genes / Proteins

FASTA format : CDS (.fna) / RNA (.fna) / All genes (.fna) / Proteins (.faa)

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FASTA format : Concatenated contigs (.fna) / All contigs (.fna) / Individual contigs (.fna - zipped if multiple)
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GFF format : All contigs (.gff)

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