Cyanorak | Organism Details

Concatenated Contigs

Syn_CC9616

Description

Species
Synechococcus sp.
Strain
CC9616
RCC N°
NCBI Taxonomy ID
110663
Genus
Synechococcus
SubCluster/Phototype
5.1
Clade
XX
SubClade
XX
Ecotype/ESTU
XXA
Pigment Type
3f
Ocean/Sea
Pacific Ocean
Oceanic Region
California Current
Latitude
30°0'0'' N (30.000 °)
Longitude
124°0'0'' W (-124.000 °)
Isolation Depth
n.a.
Isolated/Purified by
Palenik B
Isolation Date
1996
ENVO
00000207
Sequencing Center
JGI
Genome Status
WGS high quality
GenBank Acc.
AZXL00000000
RefSeq Acc.
NZ_KI911558.1
Genome Size
2,645,910
GC %
56.5
Number of CDS
3,199
Number of rRNA
3
Number of tRNA
42

Reference(s)

Lee et al. (2019)

Comments

A phylogeny based on rpoC1 is described in Toledo et al. (1999) but not the exact isolation date (1996) and location ('California Current').

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Genes / Proteins

FASTA format : CDS (.fna) / RNA (.fna) / All genes (.fna) / Proteins (.faa)

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FASTA format : Concatenated contigs (.fna) / All contigs (.fna) / Individual contigs (.fna - zipped if multiple)
GenBank format : Concatenated contigs (.gbk) / All contigs (.gbff) / Individual contigs (.gbk - zipped if multiple)
GFF format : All contigs (.gff)

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